Slovenian MAP Stage 2 Synthetic PGx Allele Frequency Dataset

Derived Slovenian synthetic pharmacogenomics dataset for MAP Stage 2 testing. The dataset contains a population-level sites-only VCF generated from the source synthetic dataset using the Genome of Europe pgx_pilot workflow. It includes aggregate allele frequency and QC statistics and does not contain individual genotypes.

Data and Resources

Additional Info

Field Value
Title Slovenian MAP Stage 2 Synthetic PGx Allele Frequency Dataset
Description

Derived Slovenian synthetic pharmacogenomics dataset for MAP Stage 2 testing. The dataset contains a population-level sites-only VCF generated from the source synthetic dataset using the Genome of Europe pgx_pilot workflow. It includes aggregate allele frequency and QC statistics and does not contain individual genotypes.
Keywords
Contact points
Contact point 1
URI
https://gdi.openscience.si/id/vcard/502e2534-db18-4932-89a4-e9fa6b16f0ce
Name
Aleš Čep
Name (translations)
{'en': 'Aleš Čep'}
Email
ales.cep@um.si
Identifier
https://gdi.openscience.si/id/vcard/502e2534-db18-4932-89a4-e9fa6b16f0ce
URL
  1. https://lhrs.feri.um.si/en/members/ales-cep/
Publisher
Publisher 1
URI
Name
University of Maribor
Name (translations)
{'en': 'University of Maribor'}
Email
support@lhrs.si
URL
https://www.um.si/en/home-page/
Type
Publisher note
Publisher type
  1. http://example.com/resource/authority/publisher-type/university
Identifier
4944e954-7769-463f-87ad-f168a27415a3
Creator
Creator 1
URI
Name
University of Maribor
Name (translations)
{'en': 'University of Maribor'}
Email
support@lhrs.si
URL
https://www.um.si/en/home-page/
Type
Publisher note
Publisher type
  1. http://example.com/resource/authority/publisher-type/university
Identifier
4944e954-7769-463f-87ad-f168a27415a3
Landing page https://rems.gdi.lhrs.si/
Release date 2026-09-01T00:00:00+00:00
Modification date 2026-10-01T00:00:00+00:00
In Series
    Version
    Version notes
    Identifier GDI-SI-UM-0000002
    Frequency
    Provenance
    Type https://publications.europa.eu/resource/authority/dataset-type/SYNTHETIC_DATA
    Temporal coverage
    Temporal resolution
    Spatial coverage
    Spatial resolution in meters
    Access rights http://publications.europa.eu/resource/authority/access-right/PUBLIC
    Other identifier
    Theme
    1. http://publications.europa.eu/resource/authority/data-theme/HEAL
    Language
    1. http://id.loc.gov/vocabulary/iso639-1/en
    Documentation
    Conforms to
    1. http://data.gdi.eu/core/p2/ExternallyGoverned
    Is referenced by
    Distribution
    1. https://fdp.gdi.lhrs.si/distribution/bc09af01-572e-4d95-aa3d-e6136211f3f4
    2. https://fdp.gdi.lhrs.si/distribution/d8888d45-b9ff-448c-a43f-4ae98d883e1f
    Sample
    Analytics
    Applicable legislation
    1. http://data.europa.eu/eli/reg/2016/679/oj
    Has version
    Code values
    Coding system
    Purpose
    Health category
    1. http://data.gdi.eu/core/p2/HealthCategoryHumanGenetic
    Health theme
    1. https://hdeu-dcat.acceptance.data.health.europa.eu/resource/authority/health-theme/HEALTH_SYSTEMS
    Legal basis
    Minimum typical age
    Maximum typical age
    Number of records
    Number of records for unique individuals.
    Personal data
    Publisher note
    Publisher type
    Trusted Data Holder
    Population coverage
    Retention period
    Health data access body
    Health data access body 1
    URI
    Name
    University of Maribor
    Name (translations)
    {'en': 'University of Maribor'}
    Email
    support@lhrs.si
    URL
    https://www.um.si/en/home-page/
    Type
    http://example.com/resource/authority/publisher-type/university
    Identifier
    4944e954-7769-463f-87ad-f168a27415a3
    Qualified relation
    Provenance activity
    Qualified attribution
    Quality annotations
    URI https://fdp.gdi.lhrs.si/dataset/c9ff6844-ae93-4bed-8183-cb87d31dfc4e